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Video: 5 minute tour of CAMBAM

Shot from the CAMBAM video.

Shot from the CAMBAM video, click to view video.

Vimeo High Definition Version (watch online)

McGill Server “Low Key” Version (download necessary)

This video showcases the aims, research, and possibilities at CAMBAM (Center for Applied Mathematics in Bioscience And Medicine). Get to know some of our research projects and scientists…

CAMBAM Summer School 2018

For the first time since 2015, the CAMBAM Summer School is back in 2018!  This edition of the summer school is focused on nonlinear dynamics in neuroscience and psychology. Bringing together advanced undergraduates, graduate students, postdoctoral fellows and established researchers, the summer school is a unique opportunity to initiate collaboration and discussion. The  summer school will include daily lectures from leading experts, tutorials that complement the lectures through the use of computational techniques and a research project. The school wraps up with a series of presentations about the projects.

More information can be found at : http://www.medicine.mcgill.ca/physio/khadralab/public_html/summer.html

The deadline to apply to the school is March 30th.

CAMBAM Student Seminar-Winter 2018 Edition

The schedule for the student seminar is (approximately) set. Seminars will take place between 4-5 PM in Burnside Hall 1120. There are still slots available- if you’re interested in speaking, contact me at tyler.cassidy [at] mail.mcgill.ca

January 24: Tyler/Yujing: Tyler spoke about a distributed delay differential equation to model tumour cell growth and the impact of immunosurveillance on tumour growth.

January 31: Ana/Russell: Ana spoke about a paper discussing bacteria growth in “Mars”-like conditions

February 21: Russell/Ana: Russell gave a series of 15 minute synoposi of his work throughout his time at McGill! Good luck in your doctoral program!

February 28: Laurent/

March 21; Sofia+Yujing/ Ana

March 28: Yujing/Tyler: Yujing presented a paper exploring the migration of salmonella bacteria into macrophages

The Return of CAMBAM Student Seminars

Fall is in the air here at McGill, bringing with it crisp mornings, frisbee in the lower field and the CAMBAM student seminar! The seminar takes place bi-weekly in room 1120 of Burnside Hall from 4-5pm.

The schedule for Fall 2017 is:


Sept 27/Amir pt. 1: Following Google themed trivia where Kyle won 2-0, Amir spoke to us about the longest common sequence (L.C.S) problem from the computer science and microbiology perspectives. After introducing the problem, Amir discussed the naive algorithm and dynamic programming principle for the L.C.S problem before leaving us on a cliffhanger waiting to see the application to mRNA transcription.

Oct 4/Amir pt. 2: Mahmoud won alternate search engine trivia. Amir continued his presentation of the alignment problem in bioinformatics, introduced the idea of deletion, insertion and copying mutations in DNA transcription/translation, and stated the Needlemann-Wunsch and Smith-Waterman theorems.

Oct 11/ Kyle/Yujing: Yujing asked a series of questions about the logisitic map, music and Saskatchewan. Kyle presented an age structured model of red blood cell production. There was a lively discussion about units, integrals and maturation.

Oct 18/Laurent/Matt: Laurent presented some of his work discretizing the Fokker-Planck equation in order to model how immune cells ingest nanoparticles.

Oct 25/Matt/Amir : Amir led off with global warming trivia and the dire state of the world. Matt spoke about a L1 minimization problem in genetics and Mahmoud presented his difference equation model for ant populations.

Nov 8/Tyler/Kyle: Kyle asked about plastic production, recycling and exponential growth of plastic in landfills. Tyler talked about exponential growth of monocytes in the bone marrow, what are white blood cells good for anyways and who cares?

Nov 22/ Yujing/ Matt: Yujing finished this semester’s CAMBAM seminar with a presentation about how object orientation can impact visual recognition.

There are still spots available for speakers, if any one would like to present their present research, a paper they have read or a question they have thought about! Seminars are run in chalk-talk format, although it is possible to use a projector.

Computational Neuroscience Workshop 2014 – Online and Timeless Material

Hello everyone!

From the feedback I had over the last two weeks and my own feelings, force is to conclude that this year again the workshop has been an exceptional occasion to acquire and share information on computational tools available to neuroscientists. (more…)

Computational Neuroscience Workshop – 2014

Flyer - Comp. Neur. 2014

Good day everyone!

Over the course of the last few months, a team of McGill neuroscience students and post-docs have been preparing talks on the topic of computational neuroscience aimed at explaining computational techniques that they are applying to their data, the results of which will be presented at the Computational Neuroscience Workshop 2014.


Computational Neuroscience Workshop, Online!

Hi guys,

Finally! After several hours of video editing and cursing (ok, it wasn’t that bad), here are the videos of the talks presented during the computational neuroscience workshop, held on May 7th of this year. (more…)

Interview: Leon Glass

Leon Glass (left) and Arthur Winfree

Leon Glass (left) and Arthur Winfree

Leon Glass, Isadore Rosenfeld Chair in Cardiology and Professor of Physiology at McGill University and CAMBAM member, has recently been awarded the Arthur Winfree prize by the Society for Mathematical Biology:  “the Arthur T. Winfree Prize […] will honor a theoretician whose research has inspired significant new biology.” [smb.org]  On this occasion we (Thomas Quail and Lennart Hilbert) have posed a few questions to Leon. Again, a reminder that Leon is not only a brilliant theorist, but is hardly found short of experiences, insights, and worthwhile pastimes to talk about. (more…)

“Computational Neuroscience Workshop” you said!?!


Several members of the CAMBAM student community, and professors associated with it, are studying in the field of neuroscience, but CAMBAM only rarely sponsored neuroscience events. It is time for this to change! (more…)

Machine Learning for dummies (just kidding)

Hi guys,

Another semester ended, another to be added the countless number of semesters that we have seen since the beginning of our academic career as professional students. Still, I’m taking the time to share with you what has made this last one particularly significant for me. I was registered in the course Machine Learning (COMP-652) and I had such a great time that I didn’t see the semester flying by, or was it because I was overwhelmed by work, it’s hard to tell. Never mind, this course taught me, and the other students who were registered, about a bunch of tools, not far from being qualified of statistics, that I’m sure you too could benefits from knowing. Unfortunately, there is only one way for you to get the fine details, and it is to register yourself, yet, I’m going to give you an appreciation of two topics covered during this class and maybe you’ll find yourself interested in learning more on the subject. (more…)

Dr. Sally Otto at McGill

Dr. Sarah P. (“Sally”) Otto is presently visiting McGill for a couple of days.  Yesterday we had two CAMBAM-sponsored events with her; thanks to everybody who turned out for those!

The first was a CAMBAM students’ roundtable lunch with Dr. Otto.  A handful of us had pizza and soda with her while talking about our research projects and bouncing around related ideas.  This was quite fun for me, since I’m not a CAMBAM member and don’t know much about what you folks do; it was great to hear about heart arrhythmias and neuron chemistry and asthma and actin and myosin and all the rest!  I hope it was also fun for the CAMBAM folks to hear about my models of floral morphology and pollen dispersal and reproductive isolation.  Mathematical biology contains such a diversity of ideas!


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